miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja



ABOUT THIS RECORD

ID: MNEST040632
species: Glycine soja
miRNA family: MIR167
source: miRBase, original name: gso-MIR167a (MI0015357)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GATCATGTGGCTGCTTCACC

mismatches: 1
bulges: 1

View larger
pre-miRNA
GCAGCAGTTGAAGCTGCCAGCATGATCTGAGTTTACCTTCTATTGGTAAGAACAGATCATGTGGCTGCTTCACCTGTTGA

dot-bracket secondary structure
.((((((.((((((.((((.(((((((((..((((((.......))))))..))))))))))))).)))))).)))))).


SIMILARITIES
miRBase gma-MIR167g: 6e-39

PMRD gma-miR167n: 1e-30

microPC miR167: 1e-30
UniProt no hits

RFAM MIR167_1: 0.00000002

Identical with: miR167 from microPC (MNEST045751)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




Liczniki na strone;